PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676759574
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ZF-HD
Protein Properties Length: 193aa    MW: 20736.2 Da    PI: 8.0225
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676759574genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.63.9e-354399459
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                 ++YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++++
    676759574 43 ITYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPDD 99
                 79*****************************99********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.8E-294397IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-314496IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-174599IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.7174596IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDMTPKSPEP ESETPTRIQP AKPISFSNGI IKRHHIHHHP ISITYKECLK NHAAAIGGHA  60
LDGCGEFMPS PSSTPSDPTS LKCAACGCHR NFHRRDPDDT SLNSAVPPPS LPPSSTTAAI  120
EYQPHHRHHP PPPVPPLPRS PNSSSPPPIS SSYMLLALSG NNKTGGNNLP FSDLNFAANN  180
LSGHHHHTPG KEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895940.0AC189594.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013N10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395326.14e-77hypothetical protein EUTSA_v10004599mg
SwissprotQ9LHF01e-68ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A087GV623e-80A0A087GV62_ARAAL; Uncharacterized protein
STRINGBra025363.1-P1e-74(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-42homeobox protein 34